Worldwide Protein Data Bank validation information: usage and trends

Smart, Oliver S.; Horský,  Vladimír; Gore, Swanand; Svobodová,  Radka; Horská,  Veronika; Kleywegt, Gerard J.; Velankar, Sameer

Worldwide Protein Data Bank validation information: usage and trends

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Authors	SMART Oliver S. HORSKÝ Vladimír GORE Swanand SVOBODOVÁ VAŘEKOVÁ Radka BENDOVÁ Veronika KLEYWEGT Gerard J. VELANKAR Sameer
Year of publication	2018
Type	Article in Periodical
Magazine / Source	Acta Crystallographica Section D
MU Faculty or unit	Central European Institute of Technology
Citation
Web	https://journals.iucr.org/d/issues/2018/03/00/ba5288/index.html
Doi	http://dx.doi.org/10.1107/S2059798318003303
Keywords	PDB; Protein Data Bank; three-dimensional macromolecular structure; validation; quality control; X-ray crystallography; ValTrendsDB
Description	It is shown how validation metrics can be combined to produce an overall score that allows the ranking of macromolecular structures and domains in search results. Additionally, ValTrendsDB database is presented: It provides users with a convenient way to access and analyse validation information and other properties of X-ray crystal structures in the PDB, including investigating trends in and correlations between different structure properties and validation metrics.
Related projects:	ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences Czech National Infrastructure for Biological Data Matematické statistické modelování 2